HL_6ZQC_037

3D structure

PDB id

6ZQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Pre-A1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUGAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZQC_037 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.1094

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

6ZQC|1|D3|G|1778
6ZQC|1|D3|U|1779
6ZQC|1|D3|G|1780
6ZQC|1|D3|A|1781
6ZQC|1|D3|A|1782
6ZQC|1|D3|C|1783

Current chains

Chain D3

18S rRNA

Nearby chains

Chain UM

U3 small nucleolar RNA-associated protein 13