HL_6ZQD_001

3D structure

PDB id

6ZQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Post-A1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZQD_001 not in the Motif Atlas

Geometric match to HL_5U3G_001

Geometric discrepancy: 0.2974

The information below is about HL_5U3G_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

6ZQD|1|D2|C|4
6ZQD|1|D2|G|5
6ZQD|1|D2|A|6
6ZQD|1|D2|A|7
6ZQD|1|D2|A|8
6ZQD|1|D2|G|9

Current chains

Chain D2

5ETS RNA

Nearby chains

Chain UH

U3 small nucleolar RNA-associated protein 8

Chain UI

U3 small nucleolar RNA-associated protein 9

Chain UQ

NET1-associated nuclear protein 1