HL_6ZQD_003
3D structure
- PDB id
- 6ZQD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Post-A1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GUUGAUCCUGC
- Length
- 11 nucleotides
- Bulged bases
- 6ZQD|1|D3|U|8, 6ZQD|1|D3|U|9
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZQD_003 not in the Motif Atlas
- Homologous match to HL_4V88_186
- Geometric discrepancy: 0.3319
- The information below is about HL_4V88_186
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_89881.2
- Basepair signature
- cWW-tHW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6ZQD|1|D3|G|7
6ZQD|1|D3|U|8
6ZQD|1|D3|U|9
6ZQD|1|D3|G|10
6ZQD|1|D3|A|11
6ZQD|1|D3|U|12
6ZQD|1|D3|C|13
6ZQD|1|D3|C|14
6ZQD|1|D3|U|15
6ZQD|1|D3|G|16
6ZQD|1|D3|C|17
Current chains
- Chain D3
- 18S rRNA
Nearby chains
- Chain D4
- U3 small nucleolar RNA; U3 snoRNA
- Chain UX
- rRNA-processing protein FCF1
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