HL_6ZQD_024
3D structure
- PDB id
- 6ZQD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Post-A1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GAUCAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 6ZQD|1|D3|C|1006
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZQD_024 not in the Motif Atlas
- Geometric match to HL_4WF9_011
- Geometric discrepancy: 0.2492
- The information below is about HL_4WF9_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75660.7
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 22
Unit IDs
6ZQD|1|D3|G|997
6ZQD|1|D3|A|998
6ZQD|1|D3|U|999
6ZQD|1|D3|C|1000
6ZQD|1|D3|A|1001
6ZQD|1|D3|G|1002
6ZQD|1|D3|A|1003
6ZQD|1|D3|U|1004
6ZQD|1|D3|A|1005
6ZQD|1|D3|C|1006
6ZQD|1|D3|C|1007
Current chains
- Chain D3
- 18S rRNA
Nearby chains
- Chain DA
- 40S ribosomal protein S1-A
- Chain DO
- 40S ribosomal protein S14-A
- Chain JJ
- Pre-rRNA-processing protein PNO1
- Chain JL
- Dimethyladenosine transferase
- Chain UM
- U3 small nucleolar RNA-associated protein 13
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