HL_6ZQD_030

3D structure

PDB id

6ZQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Post-A1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUCAUCAGC

Length

9 nucleotides

Bulged bases

6ZQD|1|D3|U|1595, 6ZQD|1|D3|C|1596, 6ZQD|1|D3|G|1601

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZQD|1|D3|G|1594
6ZQD|1|D3|U|1595
6ZQD|1|D3|C|1596
6ZQD|1|D3|A|1597
6ZQD|1|D3|U|1598
6ZQD|1|D3|C|1599
6ZQD|1|D3|A|1600
6ZQD|1|D3|G|1601
6ZQD|1|D3|C|1602

Current chains

Chain D3

18S rRNA

Nearby chains

Chain CJ

U3 small nucleolar ribonucleoprotein protein IMP4

Chain CK

U3 small nucleolar RNA-associated protein MPP10

Chain CL

Ribosome biogenesis protein BMS1

Chain DT

40S ribosomal protein S19-A

Chain UB

Nucleolar complex protein 14

Chain UK

U3 small nucleolar RNA-associated protein 11