HL_6ZQG_001

3D structure

PDB id

6ZQG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUGAUCCUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZQG_001 not in the Motif Atlas

Geometric match to HL_3DIL_002

Geometric discrepancy: 0.326

The information below is about HL_3DIL_002

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

6ZQG|1|D3|U|8
6ZQG|1|D3|U|9
6ZQG|1|D3|G|10
6ZQG|1|D3|A|11
6ZQG|1|D3|U|12
6ZQG|1|D3|C|13
6ZQG|1|D3|C|14
6ZQG|1|D3|U|15
6ZQG|1|D3|G|16

Current chains

Chain D3

18S rRNA

Nearby chains

Chain D4

U3 snoRNA

Chain UN

U3 small nucleolar RNA-associated protein 14

Chain UX

rRNA-processing protein FCF1