HL_6ZQG_015

3D structure

PDB id

6ZQG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGUGCC

Length

6 nucleotides

Bulged bases

6ZQG|1|D3|U|563, 6ZQG|1|D3|G|564, 6ZQG|1|D3|C|565

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZQG_015 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.1475

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.2

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

6ZQG|1|D3|G|561
6ZQG|1|D3|G|562
6ZQG|1|D3|U|563
6ZQG|1|D3|G|564
6ZQG|1|D3|C|565
6ZQG|1|D3|C|566

Current chains

Chain D3

18S rRNA

Nearby chains

Chain CJ

U3 small nucleolar ribonucleoprotein protein IMP4

Chain CL

Ribosome biogenesis protein BMS1

Chain DX

40S ribosomal protein S23-A

Chain UB

Nucleolar complex protein 14