HL_6ZQG_018
3D structure
- PDB id
- 6ZQG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CGUAUUG
- Length
- 7 nucleotides
- Bulged bases
- 6ZQG|1|D3|U|779, 6ZQG|1|D3|A|780, 6ZQG|1|D3|U|781, 6ZQG|1|D3|U|782
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZQG_018 not in the Motif Atlas
- Geometric match to HL_5NFV_001
- Geometric discrepancy: 0.3979
- The information below is about HL_5NFV_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_69752.4
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 7
Unit IDs
6ZQG|1|D3|C|777
6ZQG|1|D3|G|778
6ZQG|1|D3|U|779
6ZQG|1|D3|A|780
6ZQG|1|D3|U|781
6ZQG|1|D3|U|782
6ZQG|1|D3|G|783
Current chains
- Chain D3
- 18S rRNA
Nearby chains
- Chain DE
- 40S ribosomal protein S4-A
- Chain DY
- 40S ribosomal protein S24-A
Coloring options: