HL_6ZQG_022

3D structure

PDB id

6ZQG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAUCAGAUACC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZQG_022 not in the Motif Atlas

Geometric match to HL_7A0S_011

Geometric discrepancy: 0.18

The information below is about HL_7A0S_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

6ZQG|1|D3|G|997
6ZQG|1|D3|A|998
6ZQG|1|D3|U|999
6ZQG|1|D3|C|1000
6ZQG|1|D3|A|1001
6ZQG|1|D3|G|1002
6ZQG|1|D3|A|1003
6ZQG|1|D3|U|1004
6ZQG|1|D3|A|1005
6ZQG|1|D3|C|1006
6ZQG|1|D3|C|1007

Current chains

Chain D3

18S rRNA

Nearby chains

Chain DO

40S ribosomal protein S14-A

Chain JJ

Pre-rRNA-processing protein PNO1

Chain JL

Dimethyladenosine transferase