HL_6ZQG_023

3D structure

PDB id

6ZQG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUUUUUAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZQG_023 not in the Motif Atlas

Geometric match to HL_8G9Z_001

Geometric discrepancy: 0.1924

The information below is about HL_8G9Z_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

6ZQG|1|D3|U|1055
6ZQG|1|D3|U|1056
6ZQG|1|D3|U|1057
6ZQG|1|D3|U|1058
6ZQG|1|D3|U|1059
6ZQG|1|D3|U|1060
6ZQG|1|D3|A|1061
6ZQG|1|D3|A|1062
6ZQG|1|D3|U|1063
6ZQG|1|D3|G|1064

Current chains

Chain D3

18S rRNA

Nearby chains

Chain DA

40S ribosomal protein S1-A

Chain Db

40S ribosomal protein S27-A