HL_6ZS9_017

3D structure

PDB id

6ZS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with ribosome recycling factor

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AUGAACUAU

Length

9 nucleotides

Bulged bases

6ZS9|1|AA|U|1405

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZS9_017 not in the Motif Atlas

Geometric match to HL_3F2X_004

Geometric discrepancy: 0.2518

The information below is about HL_3F2X_004

Detailed Annotation

T-loop with 2 bulged bases not stacked

Broad Annotation

T-loop

Motif group

HL_13999.4

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

24

Unit IDs

6ZS9|1|AA|A|1399
6ZS9|1|AA|U|1400
6ZS9|1|AA|G|1401
6ZS9|1|AA|A|1402
6ZS9|1|AA|A|1403
6ZS9|1|AA|C|1404
6ZS9|1|AA|U|1405
6ZS9|1|AA|A|1406
6ZS9|1|AA|U|1407

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AK

28S ribosomal protein S14, mitochondrial

Chain AZ

28S ribosomal protein S33, mitochondrial

Chain m

39S ribosomal protein L55, mitochondrial