HL_6ZS9_040

3D structure

PDB id

6ZS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with ribosome recycling factor

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CAACACAG

Length

8 nucleotides

Bulged bases

6ZS9|1|XA|A|2430, 6ZS9|1|XA|A|2432, 6ZS9|1|XA|A|2434

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZS9_040 not in the Motif Atlas

Homologous match to HL_7RQB_040

Geometric discrepancy: 0.1667

The information below is about HL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

6ZS9|1|XA|C|2428
6ZS9|1|XA|A|2429
6ZS9|1|XA|A|2430
6ZS9|1|XA|C|2431
6ZS9|1|XA|A|2432
6ZS9|1|XA|C|2433
6ZS9|1|XA|A|2434
6ZS9|1|XA|G|2435

Current chains

Chain XA

16S rRNA

Nearby chains

Chain 2

39S ribosomal protein L34, mitochondrial

Chain 9

39S ribosomal protein L41, mitochondrial

Chain XT

39S ribosomal protein L22, mitochondrial