HL_6ZS9_060

3D structure

PDB id

6ZS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with ribosome recycling factor

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UUAAACAAA

Length

9 nucleotides

Bulged bases

6ZS9|1|XB|U|1614, 6ZS9|1|XB|C|1619

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZS9_060 not in the Motif Atlas

Geometric match to HL_2AZX_004

Geometric discrepancy: 0.3679

The information below is about HL_2AZX_004

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

6ZS9|1|XB|U|1613
6ZS9|1|XB|U|1614
6ZS9|1|XB|A|1615
6ZS9|1|XB|A|1616
6ZS9|1|XB|A|1618
6ZS9|1|XB|C|1619
6ZS9|1|XB|A|1620
6ZS9|1|XB|A|1621
6ZS9|1|XB|A|1622

Current chains

Chain XB

mt-tRNAVal

Nearby chains

Chain 6

39S ribosomal protein L38, mitochondrial

Chain XP

Mitochondrial ribosomal protein L18, isoform CRA_b