HL_6ZSA_017

3D structure

PDB id

6ZSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome bound to mRNA, A-site tRNA and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AUGAACUAU

Length

9 nucleotides

Bulged bases

6ZSA|1|AA|U|1405, 6ZSA|1|AA|A|1406

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZSA_017 not in the Motif Atlas

Geometric match to HL_6DN2_003

Geometric discrepancy: 0.2294

The information below is about HL_6DN2_003

Detailed Annotation

T-loop with 2 bulged bases not stacked

Broad Annotation

T-loop

Motif group

HL_13999.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

6ZSA|1|AA|A|1399
6ZSA|1|AA|U|1400
6ZSA|1|AA|G|1401
6ZSA|1|AA|A|1402
6ZSA|1|AA|A|1403
6ZSA|1|AA|C|1404
6ZSA|1|AA|U|1405
6ZSA|1|AA|A|1406
6ZSA|1|AA|U|1407

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AK

28S ribosomal protein S14, mitochondrial

Chain AZ

28S ribosomal protein S33, mitochondrial