HL_6ZSA_060

3D structure

PDB id

6ZSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome bound to mRNA, A-site tRNA and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UUAAACAAA

Length

9 nucleotides

Bulged bases

6ZSA|1|XB|U|1614, 6ZSA|1|XB|C|1619

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZSA_060 not in the Motif Atlas

Geometric match to HL_2AZX_004

Geometric discrepancy: 0.3035

The information below is about HL_2AZX_004

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

6ZSA|1|XB|U|1613
6ZSA|1|XB|U|1614
6ZSA|1|XB|A|1615
6ZSA|1|XB|A|1616
6ZSA|1|XB|A|1618
6ZSA|1|XB|C|1619
6ZSA|1|XB|A|1620
6ZSA|1|XB|A|1621
6ZSA|1|XB|A|1622

Current chains

Chain XB

mt-tRNAVal

Nearby chains

Chain 6

39S ribosomal protein L38, mitochondrial

Chain XP

Mitochondrial ribosomal protein L18, isoform CRA_b