HL_6ZSC_059

3D structure

PDB id

6ZSC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAAGAACAG

Length

9 nucleotides

Bulged bases

6ZSC|1|XA|A|3217

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZSC_059 not in the Motif Atlas

Geometric match to HL_5J7L_201

Geometric discrepancy: 0.1271

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6ZSC|1|XA|C|3216
6ZSC|1|XA|A|3217
6ZSC|1|XA|A|3218
6ZSC|1|XA|G|3219
6ZSC|1|XA|A|3220
6ZSC|1|XA|A|3221
6ZSC|1|XA|C|3222
6ZSC|1|XA|A|3223
6ZSC|1|XA|G|3224

Current chains

Chain XA

16S rRNA

Nearby chains

Chain 0

39S ribosomal protein L32, mitochondrial

Chain XE

39S ribosomal protein L3, mitochondrial

Chain XO

39S ribosomal protein L17, mitochondrial

Chain XQ

39S ribosomal protein L19, mitochondrial