HL_6ZSD_016

3D structure

PDB id

6ZSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with mRNA, P-site tRNA and E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UACCCCA

Length

7 nucleotides

Bulged bases

6ZSD|1|AA|C|1376, 6ZSD|1|AA|C|1377, 6ZSD|1|AA|C|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZSD_016 not in the Motif Atlas

Geometric match to HL_8C3A_221

Geometric discrepancy: 0.3942

The information below is about HL_8C3A_221

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.3

Basepair signature

cWW-F-F

Number of instances in this motif group

23

Unit IDs

6ZSD|1|AA|U|1373
6ZSD|1|AA|A|1374
6ZSD|1|AA|C|1375
6ZSD|1|AA|C|1376
6ZSD|1|AA|C|1377
6ZSD|1|AA|C|1378
6ZSD|1|AA|A|1379

Current chains

Chain AA

12SrRNA

Nearby chains

Chain AF

28S ribosomal protein S7, mitochondrial

Chain AG

28S ribosomal protein S9, mitochondrial

Chain AX

28S ribosomal protein S29, mitochondrial