HL_6ZSD_017

3D structure

PDB id

6ZSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with mRNA, P-site tRNA and E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AUGAACUAU

Length

9 nucleotides

Bulged bases

6ZSD|1|AA|U|1405, 6ZSD|1|AA|A|1406

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZSD_017 not in the Motif Atlas

Geometric match to HL_6DN2_003

Geometric discrepancy: 0.1862

The information below is about HL_6DN2_003

Detailed Annotation

T-loop with 2 bulged bases not stacked

Broad Annotation

T-loop

Motif group

HL_13999.4

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

24

Unit IDs

6ZSD|1|AA|A|1399
6ZSD|1|AA|U|1400
6ZSD|1|AA|G|1401
6ZSD|1|AA|A|1402
6ZSD|1|AA|A|1403
6ZSD|1|AA|C|1404
6ZSD|1|AA|U|1405
6ZSD|1|AA|A|1406
6ZSD|1|AA|U|1407

Current chains

Chain AA

12SrRNA

Nearby chains

Chain AK

28S ribosomal protein S14, mitochondrial

Chain AZ

28S ribosomal protein S33, mitochondrial