HL_6ZSD_034

3D structure

PDB id

6ZSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with mRNA, P-site tRNA and E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCUAAAAGCAG

Length

11 nucleotides

Bulged bases

6ZSD|1|XA|A|2181

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZSD_034 not in the Motif Atlas

Homologous match to HL_5J7L_161

Geometric discrepancy: 0.4761

The information below is about HL_5J7L_161

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6ZSD|1|XA|C|2175
6ZSD|1|XA|C|2176
6ZSD|1|XA|U|2177
6ZSD|1|XA|A|2178
6ZSD|1|XA|A|2179
6ZSD|1|XA|A|2180
6ZSD|1|XA|A|2181
6ZSD|1|XA|G|2182
6ZSD|1|XA|C|2183
6ZSD|1|XA|A|2184
6ZSD|1|XA|G|2185

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XJ

39S ribosomal protein L11, mitochondrial

Chain l

39S ribosomal protein L54, mitochondrial