HL_6ZSD_048

3D structure

PDB id

6ZSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with mRNA, P-site tRNA and E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UUGGGGCGA

Length

9 nucleotides

Bulged bases

6ZSD|1|XA|G|2814

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZSD_048 not in the Motif Atlas

Homologous match to HL_7A0S_052

Geometric discrepancy: 0.0999

The information below is about HL_7A0S_052

Detailed Annotation

LSU P loop

Broad Annotation

LSU P loop

Motif group

HL_11974.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

6ZSD|1|XA|U|2812
6ZSD|1|XA|U|2813
6ZSD|1|XA|G|2814
6ZSD|1|XA|G|2815
6ZSD|1|XA|G|2816
6ZSD|1|XA|G|2817
6ZSD|1|XA|C|2818
6ZSD|1|XA|G|2819
6ZSD|1|XA|A|2820

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XN

39S ribosomal protein L16, mitochondrial

Chain XW

39S ribosomal protein L27, mitochondrial