HL_6ZSE_007

3D structure

PDB id

6ZSE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with mRNA, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CCACCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZSE_007 not in the Motif Atlas

Geometric match to HL_1JID_001

Geometric discrepancy: 0.2504

The information below is about HL_1JID_001

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

6ZSE|1|AA|C|894
6ZSE|1|AA|C|895
6ZSE|1|AA|A|896
6ZSE|1|AA|C|897
6ZSE|1|AA|C|898
6ZSE|1|AA|G|899

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AD

28S ribosomal protein S5, mitochondrial

Chain AJ

28S ribosomal protein S12, mitochondrial

Chain AO

28S ribosomal protein S18b, mitochondrial