HL_6ZSE_017

3D structure

PDB id

6ZSE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with mRNA, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

AUGAACUAU

Length

9 nucleotides

Bulged bases

6ZSE|1|AA|U|1405

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZSE_017 not in the Motif Atlas

Geometric match to HL_5C45_003

Geometric discrepancy: 0.2746

The information below is about HL_5C45_003

Detailed Annotation

T-loop with 2 bulged bases not stacked

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

6ZSE|1|AA|A|1399
6ZSE|1|AA|U|1400
6ZSE|1|AA|G|1401
6ZSE|1|AA|A|1402
6ZSE|1|AA|A|1403
6ZSE|1|AA|C|1404
6ZSE|1|AA|U|1405
6ZSE|1|AA|A|1406
6ZSE|1|AA|U|1407

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AK

28S ribosomal protein S14, mitochondrial

Chain AZ

28S ribosomal protein S33, mitochondrial