HL_6ZSE_043

3D structure

PDB id

6ZSE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with mRNA, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CACAUG

Length

6 nucleotides

Bulged bases

6ZSE|1|XA|A|2558

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZSE_043 not in the Motif Atlas

Geometric match to HL_7RQB_011

Geometric discrepancy: 0.184

The information below is about HL_7RQB_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70546.1

Basepair signature

cWW-F

Number of instances in this motif group

18

Unit IDs

6ZSE|1|XA|C|2555
6ZSE|1|XA|A|2556
6ZSE|1|XA|C|2557
6ZSE|1|XA|A|2558
6ZSE|1|XA|U|2559
6ZSE|1|XA|G|2560

Current chains

Chain XA

16S rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain XD

39S ribosomal protein L2, mitochondrial