HL_6ZSG_058

3D structure

PDB id

6ZSG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with mRNA, A-site tRNA, P-site tRNA and E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AAUGAUAUCAUCUCAACU

Length

18 nucleotides

Bulged bases

6ZSG|1|XA|U|3183, 6ZSG|1|XA|C|3189

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZSG_058 not in the Motif Atlas

Geometric match to HL_7A0S_074

Geometric discrepancy: 0.2978

The information below is about HL_7A0S_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28904.1

Basepair signature

cWW-F-F-tWH-cWH-tSH-tHW-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

6ZSG|1|XA|A|3176
6ZSG|1|XA|A|3177
6ZSG|1|XA|U|3178
6ZSG|1|XA|G|3179
6ZSG|1|XA|A|3180
6ZSG|1|XA|U|3181
6ZSG|1|XA|A|3182
6ZSG|1|XA|U|3183
6ZSG|1|XA|C|3184
6ZSG|1|XA|A|3185
6ZSG|1|XA|U|3186
6ZSG|1|XA|C|3187
6ZSG|1|XA|U|3188
6ZSG|1|XA|C|3189
6ZSG|1|XA|A|3190
6ZSG|1|XA|A|3191
6ZSG|1|XA|C|3192
6ZSG|1|XA|U|3193

Current chains

Chain XA

16S rRNA

Nearby chains

Chain 4

39S ribosomal protein L36, mitochondrial

Chain XK

39S ribosomal protein L13, mitochondrial

Chain k

39S ribosomal protein L53, mitochondrial

Chain r

39S ribosomal protein S18a, mitochondrial