HL_6ZTJ_038
3D structure
- PDB id
- 6ZTJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S-RNAP expressome complex in NusG-coupled state (38 nt intervening mRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- G(5MU)(PSU)CGAUUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MU, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZTJ_038 not in the Motif Atlas
- Homologous match to HL_1B23_003
- Geometric discrepancy: 0.168
- The information below is about HL_1B23_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.9
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
6ZTJ|1|AX|G|53
6ZTJ|1|AX|5MU|54
6ZTJ|1|AX|PSU|55
6ZTJ|1|AX|C|56
6ZTJ|1|AX|G|57
6ZTJ|1|AX|A|58
6ZTJ|1|AX|U|59
6ZTJ|1|AX|U|60
6ZTJ|1|AX|C|61
Current chains
- Chain AX
- Phe-NH-tRNA(Phe) A-site
Nearby chains
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BN
- 50S ribosomal protein L16
Coloring options: