HL_6ZTJ_075

3D structure

PDB id

6ZTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in NusG-coupled state (38 nt intervening mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCAAAUC

Length

7 nucleotides

Bulged bases

6ZTJ|1|BA|C|1493, 6ZTJ|1|BA|U|1497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZTJ_075 not in the Motif Atlas

Homologous match to HL_5J7L_170

Geometric discrepancy: 0.155

The information below is about HL_5J7L_170

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

6ZTJ|1|BA|G|1492
6ZTJ|1|BA|C|1493
6ZTJ|1|BA|A|1494
6ZTJ|1|BA|A|1495
6ZTJ|1|BA|A|1496
6ZTJ|1|BA|U|1497
6ZTJ|1|BA|C|1498

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L2