HL_6ZTJ_088

3D structure

PDB id

6ZTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in NusG-coupled state (38 nt intervening mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUG(6MZ)AGAUGC

Length

10 nucleotides

Bulged bases

6ZTJ|1|BA|A|2031, 6ZTJ|1|BA|G|2032

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZTJ_088 not in the Motif Atlas

Homologous match to HL_5J7L_183

Geometric discrepancy: 0.0673

The information below is about HL_5J7L_183

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

8

Unit IDs

6ZTJ|1|BA|G|2027
6ZTJ|1|BA|U|2028
6ZTJ|1|BA|G|2029
6ZTJ|1|BA|6MZ|2030
6ZTJ|1|BA|A|2031
6ZTJ|1|BA|G|2032
6ZTJ|1|BA|A|2033
6ZTJ|1|BA|U|2034
6ZTJ|1|BA|G|2035
6ZTJ|1|BA|C|2036

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B2

50S ribosomal protein L32

Chain BD

50S ribosomal protein L3

Chain BS

50S ribosomal protein L21