HL_6ZTM_105

3D structure

PDB id

6ZTM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in collided state without NusG

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

6ZTM|1|BA|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZTM_105 not in the Motif Atlas

Homologous match to HL_5J7L_201

Geometric discrepancy: 0.0828

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6ZTM|1|BA|G|2819
6ZTM|1|BA|A|2820
6ZTM|1|BA|A|2821
6ZTM|1|BA|G|2822
6ZTM|1|BA|A|2823
6ZTM|1|BA|C|2824
6ZTM|1|BA|G|2825
6ZTM|1|BA|A|2826
6ZTM|1|BA|C|2827

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BD

50S ribosomal protein L3

Chain BO

50S ribosomal protein L17