HL_6ZTN_049

3D structure

PDB id

6ZTN (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in NusG-coupled state (42 nt intervening mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZTN_049 not in the Motif Atlas

Homologous match to HL_5J7L_141

Geometric discrepancy: 0.0935

The information below is about HL_5J7L_141

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37369.2

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

9

Unit IDs

6ZTN|1|BA|C|246
6ZTN|1|BA|G|247
6ZTN|1|BA|G|248
6ZTN|1|BA|C|249
6ZTN|1|BA|G|250
6ZTN|1|BA|A|251
6ZTN|1|BA|G|252

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AZ

Transfer RNA; tRNA

Chain B5

50S ribosomal protein L35

Chain BM

50S ribosomal protein L15