HL_6ZUO_004

3D structure

PDB id

6ZUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human RIO1(kd)-StHA late pre-40S particle, structural state A (pre 18S rRNA cleavage)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUCGCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZUO_004 not in the Motif Atlas

Geometric match to HL_6AZ4_001

Geometric discrepancy: 0.1773

The information below is about HL_6AZ4_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6ZUO|1|2|U|197
6ZUO|1|2|U|198
6ZUO|1|2|C|199
6ZUO|1|2|G|200
6ZUO|1|2|C|201
6ZUO|1|2|G|202

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain I

40S ribosomal protein S8