HL_6ZUO_017

3D structure

PDB id

6ZUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human RIO1(kd)-StHA late pre-40S particle, structural state A (pre 18S rRNA cleavage)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAUUUUGUUGGUUUUCG

Length

17 nucleotides

Bulged bases

6ZUO|1|2|U|890, 6ZUO|1|2|G|891

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZUO_017 not in the Motif Atlas

Geometric match to HL_4LX6_002

Geometric discrepancy: 0.2618

The information below is about HL_4LX6_002

Detailed Annotation

Purine riboswitch

Broad Annotation

Purine riboswitch

Motif group

HL_46333.1

Basepair signature

cWW-R-cSH

Number of instances in this motif group

11

Unit IDs

6ZUO|1|2|U|885
6ZUO|1|2|A|886
6ZUO|1|2|U|887
6ZUO|1|2|U|888
6ZUO|1|2|U|889
6ZUO|1|2|U|890
6ZUO|1|2|G|891
6ZUO|1|2|U|892
6ZUO|1|2|U|893
6ZUO|1|2|G|894
6ZUO|1|2|G|895
6ZUO|1|2|U|896
6ZUO|1|2|U|897
6ZUO|1|2|U|898
6ZUO|1|2|U|899
6ZUO|1|2|C|900
6ZUO|1|2|G|901

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S6