HL_6ZUO_020

3D structure

PDB id

6ZUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human RIO1(kd)-StHA late pre-40S particle, structural state A (pre 18S rRNA cleavage)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAUCAGAUACC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZUO_020 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.1747

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.3

Basepair signature

cWW-F

Number of instances in this motif group

5

Unit IDs

6ZUO|1|2|G|1054
6ZUO|1|2|A|1055
6ZUO|1|2|U|1056
6ZUO|1|2|C|1057
6ZUO|1|2|A|1058
6ZUO|1|2|G|1059
6ZUO|1|2|A|1060
6ZUO|1|2|U|1061
6ZUO|1|2|A|1062
6ZUO|1|2|C|1063
6ZUO|1|2|C|1064

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain O

40S ribosomal protein S14