HL_6ZUO_034

3D structure

PDB id

6ZUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human RIO1(kd)-StHA late pre-40S particle, structural state A (pre 18S rRNA cleavage)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUAUUUUGUUGGUUUUCGG

Length

19 nucleotides

Bulged bases

6ZUO|1|2|U|890, 6ZUO|1|2|G|891

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZUO_034 not in the Motif Atlas

Homologous match to HL_8P9A_208

Geometric discrepancy: 0.5626

The information below is about HL_8P9A_208

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZUO|1|2|C|884
6ZUO|1|2|U|885
6ZUO|1|2|A|886
6ZUO|1|2|U|887
6ZUO|1|2|U|888
6ZUO|1|2|U|889
6ZUO|1|2|U|890
6ZUO|1|2|G|891
6ZUO|1|2|U|892
6ZUO|1|2|U|893
6ZUO|1|2|G|894
6ZUO|1|2|G|895
6ZUO|1|2|U|896
6ZUO|1|2|U|897
6ZUO|1|2|U|898
6ZUO|1|2|U|899
6ZUO|1|2|C|900
6ZUO|1|2|G|901
6ZUO|1|2|G|902

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S6