HL_6ZV6_012

3D structure

PDB id

6ZV6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human RIO1(kd)-StHA late pre-40S particle, structural state B (post 18S rRNA cleavage)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

ACUUUAAAUCCUU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZV6_012 not in the Motif Atlas

Geometric match to HL_4V88_199

Geometric discrepancy: 0.1422

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6ZV6|1|2|A|569
6ZV6|1|2|C|570
6ZV6|1|2|U|571
6ZV6|1|2|U|572
6ZV6|1|2|U|573
6ZV6|1|2|A|574
6ZV6|1|2|A|575
6ZV6|1|2|A|576
6ZV6|1|2|U|577
6ZV6|1|2|C|578
6ZV6|1|2|C|579
6ZV6|1|2|U|580
6ZV6|1|2|U|581

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

40S ribosomal protein S9

Chain Y

40S ribosomal protein S24