HL_6ZV6_016

3D structure

PDB id

6ZV6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human RIO1(kd)-StHA late pre-40S particle, structural state B (post 18S rRNA cleavage)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUAUUUUGUUGGUUUUCGG

Length

19 nucleotides

Bulged bases

6ZV6|1|2|G|891, 6ZV6|1|2|U|892, 6ZV6|1|2|G|894, 6ZV6|1|2|U|897

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZV6|1|2|C|884
6ZV6|1|2|U|885
6ZV6|1|2|A|886
6ZV6|1|2|U|887
6ZV6|1|2|U|888
6ZV6|1|2|U|889
6ZV6|1|2|U|890
6ZV6|1|2|G|891
6ZV6|1|2|U|892
6ZV6|1|2|U|893
6ZV6|1|2|G|894
6ZV6|1|2|G|895
6ZV6|1|2|U|896
6ZV6|1|2|U|897
6ZV6|1|2|U|898
6ZV6|1|2|U|899
6ZV6|1|2|C|900
6ZV6|1|2|G|901
6ZV6|1|2|G|902

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S6