HL_6ZV6_020

3D structure

PDB id

6ZV6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human RIO1(kd)-StHA late pre-40S particle, structural state B (post 18S rRNA cleavage)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUUCCCAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZV6_020 not in the Motif Atlas

Geometric match to HL_5U3G_001

Geometric discrepancy: 0.3605

The information below is about HL_5U3G_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.8

Basepair signature

cWW-F

Number of instances in this motif group

23

Unit IDs

6ZV6|1|2|A|1113
6ZV6|1|2|U|1114
6ZV6|1|2|U|1115
6ZV6|1|2|C|1116
6ZV6|1|2|C|1117
6ZV6|1|2|C|1118
6ZV6|1|2|A|1119
6ZV6|1|2|U|1120

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain B

40S ribosomal protein S3a

Chain b

40S ribosomal protein S27