HL_6ZV6_033

3D structure

PDB id

6ZV6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human RIO1(kd)-StHA late pre-40S particle, structural state B (post 18S rRNA cleavage)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUGAAC

Length

6 nucleotides

Bulged bases

6ZV6|1|2|G|1849

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZV6_033 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.1682

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

6ZV6|1|2|G|1847
6ZV6|1|2|U|1848
6ZV6|1|2|G|1849
6ZV6|1|2|A|1850
6ZV6|1|2|A|1851
6ZV6|1|2|C|1852

Current chains

Chain 2

18S ribosomal RNA

Nearby chains