HL_6ZVH_004

3D structure

PDB id

6ZVH (explore in PDB, NAKB, or RNA 3D Hub)

Description

EDF1-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCUUCGCGGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZVH_004 not in the Motif Atlas

Geometric match to HL_4V9F_003

Geometric discrepancy: 0.2362

The information below is about HL_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.9

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6ZVH|1|2|C|195
6ZVH|1|2|C|196
6ZVH|1|2|U|197
6ZVH|1|2|U|198
6ZVH|1|2|C|199
6ZVH|1|2|G|200
6ZVH|1|2|C|201
6ZVH|1|2|G|202
6ZVH|1|2|G|203
6ZVH|1|2|G|204

Current chains

Chain 2

18S rRNA

Nearby chains

Chain I

40S ribosomal protein S8