HL_6ZVH_006

3D structure

PDB id

6ZVH (explore in PDB, NAKB, or RNA 3D Hub)

Description

EDF1-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCCCCGUG

Length

8 nucleotides

Bulged bases

6ZVH|1|2|C|324, 6ZVH|1|2|C|325, 6ZVH|1|2|C|326

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZVH_006 not in the Motif Atlas

Geometric match to HL_5J7L_200

Geometric discrepancy: 0.271

The information below is about HL_5J7L_200

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

6ZVH|1|2|C|322
6ZVH|1|2|C|323
6ZVH|1|2|C|324
6ZVH|1|2|C|325
6ZVH|1|2|C|326
6ZVH|1|2|G|327
6ZVH|1|2|U|328
6ZVH|1|2|G|329

Current chains

Chain 2

18S rRNA

Nearby chains

Chain G

40S ribosomal protein S6