HL_6ZVH_010

3D structure

PDB id

6ZVH (explore in PDB, NAKB, or RNA 3D Hub)

Description

EDF1-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

6ZVH|1|2|A|464

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZVH_010 not in the Motif Atlas

Homologous match to HL_4V88_196

Geometric discrepancy: 0.1337

The information below is about HL_4V88_196

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

6ZVH|1|2|C|462
6ZVH|1|2|C|463
6ZVH|1|2|A|464
6ZVH|1|2|A|465
6ZVH|1|2|G|466
6ZVH|1|2|G|467

Current chains

Chain 2

18S rRNA

Nearby chains

Chain G

40S ribosomal protein S6