HL_6ZVH_015

3D structure

PDB id

6ZVH (explore in PDB, NAKB, or RNA 3D Hub)

Description

EDF1-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UCUCGGCGGGGCCCGAA*A

Length

18 nucleotides

Bulged bases

6ZVH|1|2|G|786, 6ZVH|1|2|G|787, 6ZVH|1|2|G|788, 6ZVH|1|2|C|792

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZVH_015 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3431

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.2

Basepair signature

cWW-cWW

Number of instances in this motif group

3

Unit IDs

6ZVH|1|2|U|747
6ZVH|1|2|C|748
6ZVH|1|2|U|749
6ZVH|1|2|C|750
6ZVH|1|2|G|751
6ZVH|1|2|G|752
6ZVH|1|2|C|753
6ZVH|1|2|G|786
6ZVH|1|2|G|787
6ZVH|1|2|G|788
6ZVH|1|2|G|789
6ZVH|1|2|C|790
6ZVH|1|2|C|791
6ZVH|1|2|C|792
6ZVH|1|2|G|793
6ZVH|1|2|A|794
6ZVH|1|2|A|795
*
6ZVH|1|2|A|795

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

40S ribosomal protein S4, X isoform

Chain G

40S ribosomal protein S6

Chain H

40S ribosomal protein S7