HL_6ZVH_018

3D structure

PDB id

6ZVH (explore in PDB, NAKB, or RNA 3D Hub)

Description

EDF1-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAUUUUGUUGGUUUUCG

Length

17 nucleotides

Bulged bases

6ZVH|1|2|G|891, 6ZVH|1|2|G|895, 6ZVH|1|2|U|899

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZVH_018 not in the Motif Atlas

Geometric match to HL_7EQJ_004

Geometric discrepancy: 0.3411

The information below is about HL_7EQJ_004

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

6ZVH|1|2|U|885
6ZVH|1|2|A|886
6ZVH|1|2|U|887
6ZVH|1|2|U|888
6ZVH|1|2|U|889
6ZVH|1|2|U|890
6ZVH|1|2|G|891
6ZVH|1|2|U|892
6ZVH|1|2|U|893
6ZVH|1|2|G|894
6ZVH|1|2|G|895
6ZVH|1|2|U|896
6ZVH|1|2|U|897
6ZVH|1|2|U|898
6ZVH|1|2|U|899
6ZVH|1|2|C|900
6ZVH|1|2|G|901

Current chains

Chain 2

18S rRNA

Nearby chains

Chain G

40S ribosomal protein S6

Chain L

40S ribosomal protein S11