HL_6ZVJ_012

3D structure

PDB id

6ZVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human ABCE1-bound 43S pre-initiation complex - State II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GACUCUUUCGAGGCC

Length

15 nucleotides

Bulged bases

6ZVJ|1|2|U|541, 6ZVJ|1|2|G|547

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZVJ_012 not in the Motif Atlas

Geometric match to HL_4WF9_011

Geometric discrepancy: 0.2582

The information below is about HL_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

6ZVJ|1|2|G|535
6ZVJ|1|2|A|536
6ZVJ|1|2|C|537
6ZVJ|1|2|U|538
6ZVJ|1|2|C|539
6ZVJ|1|2|U|540
6ZVJ|1|2|U|541
6ZVJ|1|2|U|542
6ZVJ|1|2|C|543
6ZVJ|1|2|G|544
6ZVJ|1|2|A|545
6ZVJ|1|2|G|546
6ZVJ|1|2|G|547
6ZVJ|1|2|C|548
6ZVJ|1|2|C|549

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain B

Eukaryotic translation initiation factor 3 subunit B

Chain T

40S ribosomal protein S30

Chain Y

RNA recognition motif (unknown)