HL_6ZVJ_015

3D structure

PDB id

6ZVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human ABCE1-bound 43S pre-initiation complex - State II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGCGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZVJ_015 not in the Motif Atlas

Geometric match to HL_4WF9_060

Geometric discrepancy: 0.3286

The information below is about HL_4WF9_060

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

6ZVJ|1|2|C|711
6ZVJ|1|2|G|712
6ZVJ|1|2|C|713
6ZVJ|1|2|G|714
6ZVJ|1|2|A|715
6ZVJ|1|2|G|716

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain B

Eukaryotic translation initiation factor 3 subunit B