HL_6ZVJ_025

3D structure

PDB id

6ZVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human ABCE1-bound 43S pre-initiation complex - State II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GACUCAACAC

Length

10 nucleotides

Bulged bases

6ZVJ|1|2|A|1253

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZVJ_025 not in the Motif Atlas

Geometric match to HL_2ZNI_001

Geometric discrepancy: 0.1664

The information below is about HL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

6ZVJ|1|2|G|1245
6ZVJ|1|2|A|1246
6ZVJ|1|2|C|1247
6ZVJ|1|2|U|1248
6ZVJ|1|2|C|1249
6ZVJ|1|2|A|1250
6ZVJ|1|2|A|1251
6ZVJ|1|2|C|1252
6ZVJ|1|2|A|1253
6ZVJ|1|2|C|1254

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain g

40S ribosomal protein S16

Chain h

40S ribosomal protein S20

Chain l

40S ribosomal protein S29