HL_6ZVJ_033

3D structure

PDB id

6ZVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human ABCE1-bound 43S pre-initiation complex - State II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCCCGCCGGGGUGCCCUGGCGGAGCG

Length

26 nucleotides

Bulged bases

6ZVJ|1|2|G|1757, 6ZVJ|1|2|G|1758, 6ZVJ|1|2|U|1761, 6ZVJ|1|2|G|1771, 6ZVJ|1|2|C|1783

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZVJ|1|2|C|1750
6ZVJ|1|2|C|1751
6ZVJ|1|2|C|1752
6ZVJ|1|2|C|1753
6ZVJ|1|2|G|1754
6ZVJ|1|2|C|1755
6ZVJ|1|2|C|1756
6ZVJ|1|2|G|1757
6ZVJ|1|2|G|1758
6ZVJ|1|2|G|1759
6ZVJ|1|2|G|1760
6ZVJ|1|2|U|1761
6ZVJ|1|2|G|1771
6ZVJ|1|2|C|1772
6ZVJ|1|2|C|1773
6ZVJ|1|2|C|1774
6ZVJ|1|2|U|1775
6ZVJ|1|2|G|1776
6ZVJ|1|2|G|1777
6ZVJ|1|2|C|1778
6ZVJ|1|2|G|1779
6ZVJ|1|2|G|1780
6ZVJ|1|2|A|1781
6ZVJ|1|2|G|1782
6ZVJ|1|2|C|1783
6ZVJ|1|2|G|1784

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain r

40S ribosomal protein S6