HL_6ZVK_001

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

ACUUUUAUAGUUUAUGAAAUCUUUAUUAUU

Length

30 nucleotides

Bulged bases

6ZVK|1|E1|U|6306, 6ZVK|1|E1|U|6307, 6ZVK|1|E1|U|6314, 6ZVK|1|E1|C|6315, 6ZVK|1|E1|U|6316, 6ZVK|1|E1|U|6317, 6ZVK|1|E1|U|6318, 6ZVK|1|E1|A|6319, 6ZVK|1|E1|U|6320

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZVK|1|E1|A|6295
6ZVK|1|E1|C|6296
6ZVK|1|E1|U|6297
6ZVK|1|E1|U|6298
6ZVK|1|E1|U|6299
6ZVK|1|E1|U|6300
6ZVK|1|E1|A|6301
6ZVK|1|E1|U|6302
6ZVK|1|E1|A|6303
6ZVK|1|E1|G|6304
6ZVK|1|E1|U|6305
6ZVK|1|E1|U|6306
6ZVK|1|E1|U|6307
6ZVK|1|E1|A|6308
6ZVK|1|E1|U|6309
6ZVK|1|E1|G|6310
6ZVK|1|E1|A|6311
6ZVK|1|E1|A|6312
6ZVK|1|E1|A|6313
6ZVK|1|E1|U|6314
6ZVK|1|E1|C|6315
6ZVK|1|E1|U|6316
6ZVK|1|E1|U|6317
6ZVK|1|E1|U|6318
6ZVK|1|E1|A|6319
6ZVK|1|E1|U|6320
6ZVK|1|E1|U|6321
6ZVK|1|E1|A|6322
6ZVK|1|E1|U|6323
6ZVK|1|E1|U|6324

Current chains

Chain E1

INTERNAL RIBOSOME ENTRY SITE

Nearby chains