HL_6ZVK_004

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CGGCCGGUACAG

Length

12 nucleotides

Bulged bases

6ZVK|1|K3|U|76

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZVK_004 not in the Motif Atlas

Geometric match to HL_1P6V_001

Geometric discrepancy: 0.3817

The information below is about HL_1P6V_001

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

6ZVK|1|K3|C|69
6ZVK|1|K3|G|70
6ZVK|1|K3|G|71
6ZVK|1|K3|C|72
6ZVK|1|K3|C|73
6ZVK|1|K3|G|74
6ZVK|1|K3|G|75
6ZVK|1|K3|U|76
6ZVK|1|K3|A|77
6ZVK|1|K3|C|78
6ZVK|1|K3|A|79
6ZVK|1|K3|G|80

Current chains

Chain K3

18S RIBOSOMAL RNA

Nearby chains

Chain b3

40S ribosomal protein S6