HL_6ZVK_015

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GACUCUUUCGAGGCC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZVK|1|K3|G|535
6ZVK|1|K3|A|536
6ZVK|1|K3|C|537
6ZVK|1|K3|U|538
6ZVK|1|K3|C|539
6ZVK|1|K3|U|540
6ZVK|1|K3|U|541
6ZVK|1|K3|U|542
6ZVK|1|K3|C|543
6ZVK|1|K3|G|544
6ZVK|1|K3|A|545
6ZVK|1|K3|G|546
6ZVK|1|K3|G|547
6ZVK|1|K3|C|548
6ZVK|1|K3|C|549

Current chains

Chain K3

18S RIBOSOMAL RNA

Nearby chains

Chain s3

40S RIBOSOMAL PROTEIN ES30