HL_6ZVK_016

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

UCCACUUUAAAUCCUUUAA

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZVK|1|K3|U|566
6ZVK|1|K3|C|567
6ZVK|1|K3|C|568
6ZVK|1|K3|A|569
6ZVK|1|K3|C|570
6ZVK|1|K3|U|571
6ZVK|1|K3|U|572
6ZVK|1|K3|U|573
6ZVK|1|K3|A|574
6ZVK|1|K3|A|575
6ZVK|1|K3|A|576
6ZVK|1|K3|U|577
6ZVK|1|K3|C|578
6ZVK|1|K3|C|579
6ZVK|1|K3|U|580
6ZVK|1|K3|U|581
6ZVK|1|K3|U|582
6ZVK|1|K3|A|583
6ZVK|1|K3|A|584

Current chains

Chain K3

18S RIBOSOMAL RNA

Nearby chains

Chain I5

40S ribosomal protein S24

Chain d3

Ribosomal protein S9 (Predicted)

Chain j3

40S ribosomal protein S4